PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_18.117
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family LBD
Protein Properties Length: 207aa    MW: 22191.6 Da    PI: 8.4841
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_18.117genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.12e-40131131100
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 
                                   +C aCk+lrrkC+k+C++apyf a+q +++fa+vhk+FGasn +kll ++p+++r da+ +l+yeA arardPvyG+vg+i
  evm.model.supercontig_18.117  13 PCGACKFLRRKCVKGCIFAPYFDADQgTAHFAAVHKVFGASNASKLLMRIPTHKRLDAVVTLCYEALARARDPVYGCVGHI 93 
                                   7*************************89***************************************************** PP

                        DUF260  81 lklqqqleqlkaelallkee 100
                                   ++lqqq+ +l+aela+++++
  evm.model.supercontig_18.117  94 FTLQQQVVNLQAELAYIQAR 113
                                   ***************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.41412114IPR004883Lateral organ boundaries, LOB
PfamPF031955.7E-3913111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MEGMSGNNGG GGPCGACKFL RRKCVKGCIF APYFDADQGT AHFAAVHKVF GASNASKLLM  60
RIPTHKRLDA VVTLCYEALA RARDPVYGCV GHIFTLQQQV VNLQAELAYI QARLSTLQRL  120
SMAAQQPSPP PLSTPAPAIQ GEIGSSILEL ISTGFNPLQV PPPSATEALN RSYSMAVLDE  180
TEVQGDLQAL AREFVCRYLP GVRFRP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-3891077104LOB family transfactor Ramosa2.1
5ly0_B8e-3891077104LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_18.117
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021904378.11e-151LOB domain-containing protein 19
SwissprotO813221e-69LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A2C9WPF05e-88A0A2C9WPF0_MANES; Uncharacterized protein
STRINGevm.model.supercontig_18.1171e-151(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Representative plantOGRP40515100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.12e-70LOB domain-containing protein 19