PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_18.53

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

GRAS

Protein Properties

Length: 119aa MW: 13694.9 Da PI: 8.7061

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_18.53	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	53.4	4.9e-17	10	100	285	374
GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy.rveeesgslvlgWkdr 365 v + ++++ i+++va+eg+er++r + Wr+ + + + ++ lse+ q++l++++++ gy ++e++ +s++ gWk+ evm.model.supercontig_18.53 10 VTELIFKNGIEQIVAMEGSERVARSVKIDVWRAFFARYRMMEMGLSESSLYQVELIIKQFACAGYcTLEKNGKSMIVGWKGT 91 5677899****************************************************999736677777888** PP GRAS 366 pLvsvSaWr 374 p+ s+SaW+ evm.model.supercontig_18.53 92 PIHSLSAWK 100 ******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	1.6E-14	10	100	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MADELELRGV TELIFKNGIE QIVAMEGSER VARSVKIDVW RAFFARYRMM EMGLSESSLY 60 QVELIIKQFA CAGYCTLEKN GKSMIVGWKG TPIHSLSAWK FSRDRFREAF LNYRNELV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_18.53

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021904476.1	8e-69	LOW QUALITY PROTEIN: histone-lysine N-methyltransferase EZA1
TrEMBL	A0A1R3IHQ1	8e-47	A0A1R3IHQ1_9ROSI; Transcription factor GRAS
STRING	evm.model.supercontig_18.53	2e-82	(Carica papaya)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	2e-10	RGA-like 1

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_18.53