PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_181.8
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family G2-like
Protein Properties Length: 229aa    MW: 25516 Da    PI: 9.99
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_181.8genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like33.68.4e-11181226151
                      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                                  k+r++W+p LH +F    + L G ++A Pk++l +m+v+ Lt ++++S LQ
  evm.model.supercontig_181.8 181 KQRMVWNPYLHLKF----NTL-GDKEARPKSLLTFMDVPELTQNQIASCLQ 226
                                  79************....89*.9999************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23004.8E-4167No hitNo description
Gene3DG3DSA:1.10.10.606.6E-10179226IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-7181226IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MMTSKTTTVS LKALQDGACL CFEKAISPQN VKDVWKHVIK KKRLDEIESN ARATNCVHQE  60
NKDQTLRKGV LEDEKINKGA TMSTSRKEVV TTDPKDSKGK KRGMDQGDNG NGVEKNQATM  120
NPLKMSQVGQ SAPVSNRKEP KVGARNEKSK VRKTKFSYEN ISGNATGEDD EEDKGENCAK  180
KQRMVWNPYL HLKFNTLGDK EARPKSLLTF MDVPELTQNQ IASCLQIK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_181.8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGevm.model.supercontig_181.81e-169(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8222311
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.12e-08response regulator 1