PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_183.32
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 93aa    MW: 10497.8 Da    PI: 9.3639
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_183.32genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.7e-1019591454
                                  HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                                  d+i + + +L++l+P++ + +s Kls + +L+++++YI++L
  evm.model.supercontig_183.32 19 DQITELITKLQQLIPELRHRRSDKLSASKVLQETCNYIRNL 59
                                  6899************879********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.2E-9373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.033559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-101877IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-71959IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MSSRRSRSRQ SSSSRISDDQ ITELITKLQQ LIPELRHRRS DKLSASKVLQ ETCNYIRNLH  60
REVDDLSDRL SALLASTDSD SPEAAIIRSL LM*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_183.32
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021887859.16e-57transcription factor PRE6-like
SwissprotQ9LJX11e-38PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A1U8FK002e-43A0A1U8FK00_CAPAN; Transcription factor PRE5
TrEMBLA0A2G2XD162e-43A0A2G2XD16_CAPBA; Transcription factor PRE5
TrEMBLA0A2G3A6452e-43A0A2G3A645_CAPAN; transcription factor PRE6-like
STRINGevm.model.supercontig_183.322e-56(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Representative plantOGRP18771240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.17e-25bHLH family protein