PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_19.133

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

LBD

Protein Properties

Length: 177aa MW: 19766.4 Da PI: 6.9448

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_19.133	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	144	4.4e-45	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +Ca+Ck+lrr+C+kdC++apyfpa++p+kfa+vhk+FGasnv+k+l++lp e+r da+sslvyeA+ar+rdPvyG+vg i+ evm.model.supercontig_19.133 6 PCASCKLLRRRCVKDCIFAPYFPADDPHKFAIVHKVFGASNVSKMLQELPVEQRGDAVSSLVYEANARMRDPVYGCVGAIS 86 7****************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 lq+q++ql+ +la++++e evm.model.supercontig_19.133 87 YLQNQVSQLQMQLAVAQAE 105 *************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.927	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-44	6	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MGGNSPCASC KLLRRRCVKD CIFAPYFPAD DPHKFAIVHK VFGASNVSKM LQELPVEQRG 60 DAVSSLVYEA NARMRDPVYG CVGAISYLQN QVSQLQMQLA VAQAEILCIQ MHQDPINTIT 120 QTPSQIDHDH RDDKSFLLDH HHHHHQYYNF ASPAGNVVIQ DSLKRESLFG VHDLVS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-47	2	107	7	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-47	2	107	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_19.133

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021903937.1	1e-130	LOB domain-containing protein 12-like
Swissprot	Q8LBW3	1e-72	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A1R3FW32	2e-92	A0A1R3FW32_COCAP; Uncharacterized protein
STRING	evm.model.supercontig_19.133	1e-129	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	3e-75	LBD family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_19.133

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]