PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_19.148
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family G2-like
Protein Properties Length: 511aa    MW: 57513.6 Da    PI: 7.4444
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_19.148genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.36.4e-32107160255
                       G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                   prlrWtpeLH +Fv+ave+LGG+e+AtPk +l+lm++kgL+++hvkSHLQ+YR+
  evm.model.supercontig_19.148 107 PRLRWTPELHLCFVHAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRS 160
                                   8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.3E-30103161IPR009057Homeodomain-like
PROSITE profilePS5129413.012103163IPR017930Myb domain
SuperFamilySSF466891.16E-14107161IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-22107162IPR006447Myb domain, plants
PfamPF002491.8E-9108159IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MKSTHHHHHH HTTTGSSSQI SKTSNHNNFP FDNLSPKKDS EDDDDQDQEL DRGEADRIIH  60
GPSSSNSSSS VDEEKEINGG LKKTKNPGEG GSGSSSSVRQ YVRSNMPRLR WTPELHLCFV  120
HAVERLGGQE RATPKLVLQL MNIKGLSIAH VKSHLQMYRS KKISEYPNQA TTDQGFLFEG  180
GDSHVYNLSQ LSMLQNFNPR PSSSSTLRYS DPSWRNIHGV QNQIDSPNYS YKVGTSLMDR  240
ARLGFGNGAN LVLPAQKIYG NNKTNYNSHL GNSWFNSEAD RKFRRSRSEI SLETFRSFGR  300
EDKTEPESLF ESRNASARSC FRVQRFPSFN RISEDQNLPT SLTKHSENQL IINDQRQAGH  360
NYDHQAAIVT NYLENYNSRS SYMINNTNSW PSSLKQLRIQ ERQNLFSKRK ASSDSGSDAL  420
DLNLSLKVTE NINDDQNNNH GDSDESNNDD RVIDSTLSLS LSSSSSSKKR LHNRSLKEGD  480
DDDGNDEDNG KMKIHTRVAS RSSTDLDLTL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-18108162357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-18108162357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-18108162357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-18108162357Protein PHOSPHATE STARVATION RESPONSE 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00301DAPTransfer from AT2G40260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_19.148
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021904128.10.0uncharacterized protein LOC110819301 isoform X1
STRINGevm.model.supercontig_19.1480.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Representative plantOGRP28515123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.11e-45G2-like family protein