PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_19.151

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

LBD

Protein Properties

Length: 178aa MW: 19865.6 Da PI: 8.6877

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_19.151	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.4	3.9e-41	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+l+r+C+++C++apyf +++pkkfa vhk+FGasnv+k+l ++pee+red+++sl+yeAear+rdPvyG++g i evm.model.supercontig_19.151 14 SCAACKFLKRRCSPNCIFAPYFRSDEPKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIA 94 6****************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 lq+++ +l+++la ++++ evm.model.supercontig_19.151 95 LLQRKMVELQHDLAIARAR 113 ***********999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.69	13	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.8E-40	14	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MKAMRGHEPR SSSSCAACKF LKRRCSPNCI FAPYFRSDEP KKFAKVHKVF GASNVSKILI 60 EVPEEQREDT VNSLAYEAEA RLRDPVYGCI GAIALLQRKM VELQHDLAIA RARLARYSAN 120 PSSSSSYISV FNNHMAMPSF NDLPGYGGLL FDGYGQSYSL EINRDGQMYD FSQTPYV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-48	9	118	6	115	LOB family transfactor Ramosa2.1
5ly0_B	9e-48	9	118	6	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_19.151

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021904125.1	1e-130	LOB domain-containing protein 21
Swissprot	Q9SRL8	2e-71	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A438J2F2	1e-93	A0A438J2F2_VITVI; LOB domain-containing protein 21
STRING	evm.model.supercontig_19.151	1e-130	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10255	27	35
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	1e-70	LOB domain-containing protein 21

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_19.151

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]