PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_19.152
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family Trihelix
Protein Properties Length: 250aa    MW: 28122.8 Da    PI: 9.972
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_19.152genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix452.8e-1421105186
                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergfer..spkqCkekwenlnkrykkikegekkrtsess 76 
                                   +W++  + +Lie   ++  +l+rg+l++++W+ev++++   r  g+ r  + +qCk++++ l+k+yk +k           
  evm.model.supercontig_19.152  21 CWSEAATEVLIETWGDRYVKLNRGNLRQKDWKEVADAVnssRYDGIVRlkTDVQCKNRIDTLKKKYKLEKGKPAP------ 95 
                                   7*************************************77766666665699***************99877775...... PP

                      trihelix  77 stcpyfdqle 86 
                                   s++p+f++l+
  evm.model.supercontig_19.152  96 SKWPFFHRLD 105
                                   68******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.6E-2619107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MDPHGPTHQL PASVGGGRED CWSEAATEVL IETWGDRYVK LNRGNLRQKD WKEVADAVNS  60
SRYDGIVRLK TDVQCKNRID TLKKKYKLEK GKPAPSKWPF FHRLDSLIGV AKKPPSVTFT  120
VNSSRHKPGV NPNLYAAGSK STESSFGGDD DNDEDEGVGS MARKQHRAQA VDFSGGAGYR  180
ELARAILKFG EAYERIESSK QQQIMELEKQ RMEFMKDLEF KRMNMLMDAQ VQLEKLKRKR  240
QAADSGKKS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_19.152
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021904123.10.0trihelix transcription factor ASIL2
SwissprotQ9LJG81e-36ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A061FKY61e-98A0A061FKY6_THECC; Sequence-specific DNA binding transcription factors
STRINGevm.model.supercontig_19.1520.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49262141
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.14e-74sequence-specific DNA binding transcription factors