PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_19.155
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 237aa    MW: 26632.5 Da    PI: 5.1011
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_19.155genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.45.7e-128421247
                                  HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                   v av+++G ++W+ I++ ++ gR++k+c++rw + 
  evm.model.supercontig_19.155  8 VVAAVEEHGARNWTVISAGIP-GRSGKSCRLRWCNQ 42
                                  589******************.***********985 PP
2Myb_DNA-binding52.51.1e-165193347
                                  SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                  ++T+ Ed  +++a++ +G++ W+tIar ++ gRt++ +k++w++ 
  evm.model.supercontig_19.155 51 PFTPTEDAVILRAHAIHGNK-WATIARLLP-GRTDNAIKNHWNST 93
                                  89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.716143IPR017930Myb domain
SMARTSM007170.0062345IPR001005SANT/Myb domain
PfamPF002494.2E-11842IPR001005SANT/Myb domain
CDDcd001674.61E-9941No hitNo description
Gene3DG3DSA:1.10.10.602.0E-16950IPR009057Homeodomain-like
SuperFamilySSF466892.26E-252398IPR009057Homeodomain-like
PROSITE profilePS5129425.6144498IPR017930Myb domain
SMARTSM007176.4E-144896IPR001005SANT/Myb domain
PfamPF002495.9E-145193IPR001005SANT/Myb domain
CDDcd001675.65E-125194No hitNo description
Gene3DG3DSA:1.10.10.604.0E-235197IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MMKRENDVVA AVEEHGARNW TVISAGIPGR SGKSCRLRWC NQLNPAVQHR PFTPTEDAVI  60
LRAHAIHGNK WATIARLLPG RTDNAIKNHW NSTLRRKRSG VGTQNHSRSN SSLVMNGNSS  120
KRQCLHGPQE HGDYSSVPAF DGPETSLSLS PPGKGVVSLA AEEEEEVEEE EEEEEEEEEE  180
EEVEERLTVE MEESLLSIVQ RMIAQEVRNY MDNNWQAHFG LSYGPRIQPM TRKDPQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-3159715107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_19.155
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016515570.15e-75PREDICTED: transcription factor MYB44-like
TrEMBLA0A1S4DQ721e-73A0A1S4DQ72_TOBAC; transcription factor MYB44-like
STRINGevm.model.supercontig_19.1551e-175(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.16e-45myb domain protein 77