PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_19.173
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NF-X1
Protein Properties Length: 877aa    MW: 97495.1 Da    PI: 8.3536
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_19.173genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.12.5e-05194212120
                      zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                                   CG H C  lCH+GpCp+Cp+
  evm.model.supercontig_19.173 194 CG-HFCLLLCHPGPCPSCPK 212
                                   **.***************96 PP
2zf-NF-X117.21.1e-05248265320
                      zf-NF-X1   3 kHkCqklCHeGpCppCpq 20 
                                   +HkC ++CH G CppC++
  evm.model.supercontig_19.173 248 IHKCTEICHDGSCPPCKA 265
                                   8***************95 PP
3zf-NF-X119.12.8e-06406423118
                      zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                                   CG+H C+++C+ G+CppC
  evm.model.supercontig_19.173 406 CGRHACKRKCCDGDCPPC 423
                                   ****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS01359081147IPR019786Zinc finger, PHD-type, conserved site
CDDcd060082.12E-5182230No hitNo description
SMARTSM004380.0049194212IPR000967Zinc finger, NF-X1-type
PfamPF014220.0029194211IPR000967Zinc finger, NF-X1-type
CDDcd060083.57E-7236282No hitNo description
SMARTSM004381.1E-4246265IPR000967Zinc finger, NF-X1-type
PfamPF014220.001248264IPR000967Zinc finger, NF-X1-type
CDDcd060084.15E-8289329No hitNo description
SMARTSM004386.2E-4299318IPR000967Zinc finger, NF-X1-type
PfamPF014220.015299317IPR000967Zinc finger, NF-X1-type
CDDcd060081.71E-8343392No hitNo description
SMARTSM004380.047353373IPR000967Zinc finger, NF-X1-type
PfamPF014220.004353372IPR000967Zinc finger, NF-X1-type
CDDcd060086.61E-8396444No hitNo description
SMARTSM004380.0056406425IPR000967Zinc finger, NF-X1-type
PfamPF014226.3E-4406423IPR000967Zinc finger, NF-X1-type
CDDcd060083.53E-10423471No hitNo description
PfamPF014220.013427451IPR000967Zinc finger, NF-X1-type
SMARTSM004380.056433452IPR000967Zinc finger, NF-X1-type
SMARTSM0043899490511IPR000967Zinc finger, NF-X1-type
PfamPF014229.7500510IPR000967Zinc finger, NF-X1-type
SMARTSM00438190519564IPR000967Zinc finger, NF-X1-type
PfamPF0142222519528IPR000967Zinc finger, NF-X1-type
SMARTSM0043840601638IPR000967Zinc finger, NF-X1-type
PfamPF014220.15601611IPR000967Zinc finger, NF-X1-type
SMARTSM004380.085644662IPR000967Zinc finger, NF-X1-type
PfamPF014220.3645661IPR000967Zinc finger, NF-X1-type
SMARTSM0043821707729IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 877 aa     Download sequence    Send to blast
MSSAINRRLA PPPPAPVPVS GSDTDSDSDT GSDPHNRHAD LSNSIFKSYL DCHQSSSSST  60
SVGLSKIQSF LASSSSGALS CLICLERIKR PEPTWSCSSL CFAVFHLVCI QSWSRQSCDL  120
HAARAAIRLP ISAEKATESA IWNCPKCRSP YTRSQIPRKY LCFCGKLEDP PSDNPWILPH  180
SCGEVCERPL SNNCGHFCLL LCHPGPCPSC PKLVKARCFC GFVEDVRRCG FKDFSCNNHC  240
RRILDCKIHK CTEICHDGSC PPCKARGVYS CQCGKVKEER DCWNRVFRCE NPCENLLGCG  300
KHVCERGCHS GDCGDCPLQG KRTCPCGKRL HEGISCDVAV PLCGATCDKM LGCGFHKCPE  360
RCHRGPCIET CRTVVMKSCR CGGLKKQVPC YQDLTCDRKC QRMRDCGRHA CKRKCCDGDC  420
PPCAEVCGRR LRCKNHKCPA PCHQGSCAPC PLMVTISCAC GETHFEVPCG TEMDQKPPRC  480
RKLCPIAPLC RHGSSIKPHK CHYGACPTCK LPCDEEYPCG HKCQLRCHGP RPPPNPEFTL  540
KPKKKKFNHQ NECTPGSSCP PCPELGWRSC VGQHLGAERM MVCSDRSMFS CDNLCGNLLL  600
CGNHYCTKTC HALNNQSSSS DRSKISESCE ECHLPCQKER QPACQHPCPL PCHSGECPSC  660
KVLIKRSCHC GSLVHAFECI YYNTLSEKEQ MTIRSCGGPC HRKLPNCTHL CPETCHPGQC  720
PVPDKCCKKV TVRCKCQTLK KEWVCQDVQA AYRNAGYDPK DISKNQFGLG LLPCNSDCKS  780
KIQAVESVLQ LRKSKEIEKV ETAIEKNAPK RRRRRDRTQE AKQASKLEKL VGTVKRLLLW  840
LTLVAVVIAA MYYGYNGLLW LSDWMNEVDG RRQRRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1809814KRRRRR
2870875RRQRRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_19.173
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021904143.10.0NF-X1-type zinc finger protein NFXL2 isoform X1
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A061FKD20.0A0A061FKD2_THECC; Sequence-specific DNA binding transcription factor isoform 1
STRINGevm.model.supercontig_19.1730.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM109542730
Representative plantOGRP63251718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors