PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_19.92

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

LBD

Protein Properties

Length: 234aa MW: 25469 Da PI: 9.165

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_19.92	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.2	5.2e-42	44	143	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r d+++slvyeA++r+rdPvyG++g i++ evm.model.supercontig_19.92 44 PCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADTANSLVYEANVRLRDPVYGCMGAISA 125 7******************************************************************************* PP DUF260 83 lqqqleqlkaelallkee 100 lqqq+++l+ael+++++e evm.model.supercontig_19.92 126 LQQQVQSLQAELNAVRAE 143 ************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.756	43	144	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.5E-42	44	141	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MSSRERERFD EIGKKIKREA DHASQLMGRR HMLGPPGTLN TVTPCAACKL LRRRCAQECP 60 FSPYFSPHEP HKFASVHKVF GASNVSKMLM EVPESQRADT ANSLVYEANV RLRDPVYGCM 120 GAISALQQQV QSLQAELNAV RAEILRYKYR EPNIINIAST SSSYHHHHHV ALLPSGIVSI 180 AAAPPPPPAQ VLPVAPLTPS PPTASSSSSM YTQPTTATSY SSPVSSENVS YFG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-45	36	151	3	118	LOB family transfactor Ramosa2.1
5ly0_B	5e-45	36	151	3	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_19.92

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021904167.1	1e-172	LOB domain-containing protein 15
Swissprot	Q8L5T5	3e-87	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A061FRT3	1e-113	A0A061FRT3_THECC; LOB domain-containing protein 15
STRING	evm.model.supercontig_19.92	1e-171	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1927	27	81
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	2e-84	LOB domain-containing protein 15

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_19.92

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]