PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_190.30
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 170aa    MW: 18299.2 Da    PI: 10.4982
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_190.30genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00123052123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ++C+ C++ F++   L  H  +H
  evm.model.supercontig_190.30 30 FTCKTCNREFPSFQALGGHRASH 52
                                  89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.56E-82895No hitNo description
PfamPF139122.2E-122954IPR007087Zinc finger, C2H2
SMARTSM003550.163052IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.2243057IPR007087Zinc finger, C2H2
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
PfamPF139127.5E-107297IPR007087Zinc finger, C2H2
SMARTSM003550.57395IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.47373100IPR007087Zinc finger, C2H2
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MANCLMLLSK VGKNDGVFTL GKPTQNGRVF TCKTCNREFP SFQALGGHRA SHKKPQLDQT  60
TQLPVSPKKP KTHECSICGL EFAIGQALGG HMRRHRGGGH SGNSESSSSE TKRSAVVMGP  120
ATLTMKKTSK IKRVFGLDLN LTPLENDCLR LGLGKVATTS HHHVVDCFM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110117TKRSAVVM
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_190.30
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021887642.11e-123zinc finger protein ZAT12-like
TrEMBLA0A438JY509e-52A0A438JY50_VITVI; Zinc finger protein ZAT12
TrEMBLF6HN909e-52F6HN90_VITVI; Uncharacterized protein
STRINGevm.model.supercontig_190.301e-122(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.11e-35C2H2 family protein