PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_190.35
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 251aa    MW: 28922.5 Da    PI: 7.0325
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_190.35genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.65.8e-18855148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT++Ed llv+ v+++G ++W+ Ia+  g++Rt+k+c++rw +yl
  evm.model.supercontig_190.35  8 KGPWTEQEDILLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 55
                                  79********************************************97 PP
2Myb_DNA-binding52.41.2e-1661106148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg++T +E+ l +++++++G++ W++Iar+++ gRt++++k++w++++
  evm.model.supercontig_190.35  61 RGKMTLQEERLVLELHAKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 106
                                   89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.947355IPR017930Myb domain
SuperFamilySSF466892.26E-297102IPR009057Homeodomain-like
SMARTSM007175.2E-16757IPR001005SANT/Myb domain
PfamPF002499.1E-17855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-20962IPR009057Homeodomain-like
CDDcd001671.41E-111055No hitNo description
PROSITE profilePS5129426.50656110IPR017930Myb domain
SMARTSM007174.3E-1660108IPR001005SANT/Myb domain
PfamPF002495.7E-1561105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-2363109IPR009057Homeodomain-like
CDDcd001672.70E-1163106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MVQEETRKGP WTEQEDILLV NFVHLFGDRR WDFIAKVSGL NRTGKSCRLR WVNYLHPGLK  60
RGKMTLQEER LVLELHAKWG NRWSRIARKL PGRTDNEIKN YWRTHMRKKA QQRKQDNSPS  120
SPSSNCCSSS STVTTVDLML FPDAGKASFY DTGGLDHVTT PEGKKIEVEE EKGYSMDDIW  180
KDIDLSEENT IKPVSNGYSN FSYPSIVASP SWEYSLDSVW RIFEEDTKMF LPTNQFPPCS  240
YEYGEAFLTG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-2881104105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_190.35
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021887605.10.0transcription factor MYB59 isoform X1
SwissprotQ9LX822e-99MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A061GXJ91e-119A0A061GXJ9_THECC; Myb domain protein 59 isoform 2
STRINGevm.model.supercontig_190.350.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25022774
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.14e-97myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]