PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_192.19
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 260aa    MW: 30256 Da    PI: 9.5271
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_192.19genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM66.57.6e-216016432128
                           NAM  32 evikevdiykvePwdLpkkvkaeek..ewyfFskrdkkya..tgkrknratksgyWkatgkdkevlskkgelvglkktLvf 108
                                    +i ++d+y+++P  Lp +++ + +    y+F++r+k +a  + +r++r+++ g W++   dk++l+ +g+++g kktL f
  evm.model.supercontig_192.19  60 IFIIDADVYESHPAALPWELYPGLTcsYRYYFTRRHKVSAncNPNRPKRTVDCGWWRSDTGDKDILH-RGKVIGRKKTLSF 139
                                   35999************544444343266******9998844578**********************.999********** PP

                           NAM 109 y.....kgrapkgektdWvmheyrl 128
                                   +     ++++++++kt W+mheyrl
  evm.model.supercontig_192.19 140 FvykdtTKKRKDAQKTGWIMHEYRL 164
                                   98888767888899*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.76231180IPR003441NAC domain
SuperFamilySSF1019412.62E-2656180IPR003441NAC domain
PfamPF023655.2E-1171164IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MQVFATSPTR RQNVRTSRTK NTRRSLYPTA LFPAWRRSGR RAGAASTGLP VCWQSHLLNI  60
FIIDADVYES HPAALPWELY PGLTCSYRYY FTRRHKVSAN CNPNRPKRTV DCGWWRSDTG  120
DKDILHRGKV IGRKKTLSFF VYKDTTKKRK DAQKTGWIMH EYRLADDSFQ EWVLCKIYNK  180
PNKKNKNFEM ETADSSICET AILSENQLES ILVETDYQHG RSDNTPQNVE ERSYTEYVTD  240
WASLFWGDNE QPVANLQSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-136118648171NO APICAL MERISTEM PROTEIN
1ut4_B6e-136118648171NO APICAL MERISTEM PROTEIN
1ut7_A6e-136118648171NO APICAL MERISTEM PROTEIN
1ut7_B6e-136118648171NO APICAL MERISTEM PROTEIN
3swm_A7e-136118651174NAC domain-containing protein 19
3swm_B7e-136118651174NAC domain-containing protein 19
3swm_C7e-136118651174NAC domain-containing protein 19
3swm_D7e-136118651174NAC domain-containing protein 19
3swp_A7e-136118651174NAC domain-containing protein 19
3swp_B7e-136118651174NAC domain-containing protein 19
3swp_C7e-136118651174NAC domain-containing protein 19
3swp_D7e-136118651174NAC domain-containing protein 19
3ulx_A6e-134418637174Stress-induced transcription factor NAC1
4dul_A6e-136118648171NAC domain-containing protein 19
4dul_B6e-136118648171NAC domain-containing protein 19
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132149RKKTLSFFVYKDTTKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_192.19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021887588.11e-178NAC domain-containing protein 67-like
STRINGevm.model.supercontig_192.190.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16333214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.12e-14NAC family protein