PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_195.14
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 246aa    MW: 28057.2 Da    PI: 6.1079
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_195.14genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM146.91e-4541351128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknra 77 
                                   lp GfrF Pt+eelv++yL++k+eg++ +l++vi+ + +++ ePwdLp+     +++++++w+fFs+r++++ +g r++r+
  evm.model.supercontig_195.14   4 LPTGFRFYPTEEELVSFYLCHKLEGRRQDLHRVIPVISVFDNEPWDLPElageLCQGDTEQWFFFSPRQEREFRGGRPSRT 84 
                                   699***************************99***************9656754455777********************* PP

                           NAM  78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   t+sgyWkatg+   v+s++++++g+kkt+vfykgrap+g+kt+W mheyr+
  evm.model.supercontig_195.14  85 TASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGRAPTGRKTKWKMHEYRA 135
                                   *************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-483159IPR003441NAC domain
PROSITE profilePS5100547.9184161IPR003441NAC domain
PfamPF023659.5E-255134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MEELPTGFRF YPTEEELVSF YLCHKLEGRR QDLHRVIPVI SVFDNEPWDL PELAGELCQG  60
DTEQWFFFSP RQEREFRGGR PSRTTASGYW KATGSPSYVY SSDNRVIGVK KTMVFYKGRA  120
PTGRKTKWKM HEYRAIEGAA NPSASAPKLR HEFSLHRIYV ISGSFRAFDR RPLEPVTRET  180
RPVSAGASTS SHVTTVAEKE SSSETSHSGG DHSDFQENIG QTDVEMVDGL EQPLWEWEKL  240
DLDWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-35413717144NO APICAL MERISTEM PROTEIN
1ut4_B3e-35413717144NO APICAL MERISTEM PROTEIN
1ut7_A3e-35413717144NO APICAL MERISTEM PROTEIN
1ut7_B3e-35413717144NO APICAL MERISTEM PROTEIN
3swm_A3e-35415920166NAC domain-containing protein 19
3swm_B3e-35415920166NAC domain-containing protein 19
3swm_C3e-35415920166NAC domain-containing protein 19
3swm_D3e-35415920166NAC domain-containing protein 19
3swp_A3e-35415920166NAC domain-containing protein 19
3swp_B3e-35415920166NAC domain-containing protein 19
3swp_C3e-35415920166NAC domain-containing protein 19
3swp_D3e-35415920166NAC domain-containing protein 19
4dul_A3e-35413717144NAC domain-containing protein 19
4dul_B3e-35413717144NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_195.14
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ4785721e-164GQ478572.2 Carica papaya clone BAC DM105M02, complete sequence.
GenBankGQ4785731e-164GQ478573.2 Carica papaya clone BAC SH18O09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021887487.10.0NAC domain-containing protein 90
SwissprotQ9FMR39e-95NAC90_ARATH; NAC domain-containing protein 90
TrEMBLR4N7M31e-124R4N7M3_JATCU; NAC transcription factor 037
STRINGevm.model.supercontig_195.140.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14452893
Representative plantOGRP22781136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.21e-98NAC domain containing protein 61
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]