PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_195.42

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

FAR1

Protein Properties

Length: 258aa MW: 29356 Da PI: 6.4077

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_195.42	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	91.1	1.5e-28	98	185	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkle 82 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gkw+vtk++ evm.model.supercontig_195.42 98 FYNAYATQVGFIIRVSKLSRSRRDGSAIGRALVCNKEGYRMPDKRE--KIVRQRAETRVGCRAMILVRKVSSGKWVVTKFV 176 ****************************************9988..9**************************** PP FAR1 83 leHnHelap 91 +eH+H+l+p evm.model.supercontig_195.42 177 KEHTHPLTP 185 ****986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.7E-26	98	185	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MADNYICFVF YVEFGIESDI NGEIIKNTIE IESNRVGDDN LTGGNSLQVT FQQDEDFKLD 60 QDSSQGSIPQ AMPAVSVVPA DEPYVGQEFE SEVAAHAFYN AYATQVGFII RVSKLSRSRR 120 DGSAIGRALV CNKEGYRMPD KREKIVRQRA ETRVGCRAMI LVRKVSSGKW VVTKFVKEHT 180 HPLTPGKGRR DCIYDQYPNE HDKIRELSQQ LAVERKRAAT YKRHLELIFE QIEEHNESLS 240 KKIQHIVDSV REIENSE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_195.42

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021887514.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	W9RTC0	1e-149	W9RTC0_9ROSA; Uncharacterized protein
STRING	evm.model.supercontig_195.42	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7302	25	39
Representative plant	OGRP10299	6	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-114	FAR1 family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_195.42