PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_2.123
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ZF-HD
Protein Properties Length: 196aa    MW: 22369.5 Da    PI: 10.5231
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_2.123genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer78.21.1e-24352357
                  ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                                 + +Y eC +NhAa+lG++++DGC+Ef++++      +   CaACgCHRn+HRr +
  evm.model.supercontig_2.123  3 TQVYMECNRNHAAHLGAYSLDGCREFLSQN-----EDEYSCAACGCHRNYHRRIP 52
                                 678*************************93.....45699************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.0E-19550IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-11661IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.9E-17650IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152321.813651IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.7E-12124181IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
METQVYMECN RNHAAHLGAY SLDGCREFLS QNEDEYSCAA CGCHRNYHRR IPLIDLETEP  60
VPVTVEDGEG SGGRGRGRRL GRQRFNFSLR VIKNIARLRG EMVRSERPQP PAPVPADPLG  120
FRARPKKARF TVAQREALLS LAQRLGWKMR HRGHKAEVDR AISEIGVCRR VFKTWLYNNK  180
RFYHVREAAS SSHTP*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00143DAPTransfer from AT1G14687Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_2.123
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021909778.11e-144zinc-finger homeodomain protein 14-like
STRINGevm.model.supercontig_2.1231e-143(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137282124
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14687.17e-31homeobox protein 32