PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_2.268
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family B3
Protein Properties Length: 433aa    MW: 48753.9 Da    PI: 9.9576
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_2.268genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.87.3e-17224314199
                                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                                  f k +++s+v +  +l lp kf+ ++  + +++++++lede+g++++  +i r+++    l++GW+ F+ +++L++gD +vF
  evm.model.supercontig_2.268 224 FTKSMVRSHVYSCFWLGLPTKFCVDFL-P-KSTVDMVLEDEDGKEFDAIYIGRRTG----LSGGWRAFALEHKLDDGDGLVF 299
                                  89*********************9885.3.4789****************544444....********************** PP

                                  EE-SSSEE..EEEEE-S CS
                           B3  83 kldgrsefelvvkvfrk 99 
                                  +l+++++f  ++ +fr 
  evm.model.supercontig_2.268 300 ELIESNRF--KIYIFRV 314
                                  **997888..8888885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-20215314IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-23217314IPR015300DNA-binding pseudobarrel domain
CDDcd100177.22E-27222313No hitNo description
SMARTSM010199.4E-22224315IPR003340B3 DNA binding domain
PfamPF023623.1E-15224313IPR003340B3 DNA binding domain
PROSITE profilePS5086312.633224315IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MMSSAVSCAS RKKFEILKGA ISCRGEALPV ATSLEIHEVG FIQHANKLKV KPTSSFFTIR  60
ILSFCLLPIL SLSLLLATLG SLHTPDMVDN CITNSYEEIR KQRLEENRKR FEDLGIAKIS  120
KSLQQLSNPE KKSPQRLSKP KQKTVYAMES RRSSRARNPV PSYREDLDVE LPCSRRSRSS  180
TSSWASYIAR PLDECRTASF EERAQALKVA DDFKSSLQSG NPSFTKSMVR SHVYSCFWLG  240
LPTKFCVDFL PKSTVDMVLE DEDGKEFDAI YIGRRTGLSG GWRAFALEHK LDDGDGLVFE  300
LIESNRFKIY IFRVSLLSSQ QHTTIVPLSS TDQEPATHAR KRKMPAIKPD LESDQTEKAE  360
QPTILKKNQK CKRRNVEVTE GELLIDDLKE KKESVPENGS DSPTKGLGLG KNTTVAFKPR  420
RKPAPRYLQK RS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_2.268
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021909945.10.0putative B3 domain-containing protein At5g58280
SwissprotQ9FHB25e-69Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBLA0A2R6PPL81e-110A0A2R6PPL8_ACTCH; B3 domain-containing protein
STRINGevm.model.supercontig_2.2680.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM161411214
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.12e-68B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]