PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_2.395
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family G2-like
Protein Properties Length: 195aa    MW: 22231.5 Da    PI: 10.7642
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_2.395genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.59.5e-261669255
                      G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                                 prl+W+p+LH++Fveave+LGG+ kAtPk++l+ m+++ L ++h+ SHLQ YR 
  evm.model.supercontig_2.395 16 PRLKWNPTLHQCFVEAVERLGGAFKATPKQLLQKMNIPELNISHLNSHLQLYRA 69
                                 8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-221270IPR009057Homeodomain-like
SuperFamilySSF466892.15E-91670IPR009057Homeodomain-like
TIGRFAMsTIGR015576.3E-191671IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
METNKKVRKY VRSEVPRLKW NPTLHQCFVE AVERLGGAFK ATPKQLLQKM NIPELNISHL  60
NSHLQLYRAK KIKEWEQCED QRKLCKRRVA NSSRALQFGG EESRKRSAQD LHEGQSTSMD  120
GFGETLTLAV APTSMGKRKE KGKAGNGHGH VDLKLSLGTK SKRSSGESLR RNRYYLNNRE  180
QEMGRYLSLF VSPM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_2.395
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGevm.model.supercontig_2.3951e-143(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Representative plantOGRP28515123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-24G2-like family protein