PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_20.234
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family EIL
Protein Properties Length: 500aa    MW: 56963 Da    PI: 5.0931
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_20.234genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3385.67.5e-118393551335
                                   XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                          EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekg 81 
                                   ++lkkrmwkd+ ++++lk+++ +     e++t+      +++++rrkkm+raQD+iLkYM+k+mevc+ qGfvYgi+p+kg
  evm.model.supercontig_20.234  39 DDLKKRMWKDRLRMQKLKKQRDE-----ESETQ-----AREDASRRKKMARAQDSILKYMVKIMEVCKGQGFVYGIVPNKG 109
                                   79*************99888876.....33233.....46899************************************** PP

                                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TT CS
                          EIN3  82 kpvegasdsLraWWkekvefdrngpaaisky..qaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqr 160
                                   kpv+g+sdsLr WWkekv+fd+n+p ais+y    ++ +++ ++s      s  h l++lqDTtlgSLLsalmqhc ppqr
  evm.model.supercontig_20.234 110 KPVTGSSDSLRYWWKEKVRFDQNAPLAISEYlpLLEQSLPATGNST----ASFIHLLQDLQDTTLGSLLSALMQHCIPPQR 186
                                   *******************************876677777755555....789**************************** PP

                                   S--TTT--HHHH---S--HHHHHHT.--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--S CS
                          EIN3 161 rfplekgvepPWWPtGkelwwgelg.lskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsa 240
                                   rfple+g++pPWWPtG+e wwge+g ++k+qg+ppykkphdlkkawkvs L+avikhmsp++ +ir+l+ qsk+lqdkm+a
  evm.model.supercontig_20.234 187 RFPLERGIAPPWWPTGREVWWGEQGmVAKEQGPPPYKKPHDLKKAWKVSALAAVIKHMSPNVHQIRRLVKQSKCLQDKMMA 267
                                   ********************************************************************************* PP

                                   HHHHHHHHHHTTTTT-S--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                          EIN3 241 kesfallsvlnqeekecatvsahssslrkqspkvtlsceqkedvegkkeskikhvqavkttagfpvvrkrkkkpsesakvs 321
                                   ke++++++vlnqee ++ ++  +       + +   ++++ked +g+++s   + +  ++t++    r+ k+k +  + vs
  evm.model.supercontig_20.234 268 KETATWSKVLNQEELLL-QLTEKC-----LKISASDEEDNKEDEQGHSKSTSGKGKYISETSSPRSSRQAKRKCVAAEEVS 342
                                   *************9655.343332.....2233344455566666666666666667777777778888888888888888 PP

                                   XX......XXXXXX CS
                          EIN3 322 skevsrtcqssqfr 335
                                    +   r c++   +
  evm.model.supercontig_20.234 343 LNT-LRSCHNLISQ 355
                                   884.5888886554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048735.6E-11639281No hitNo description
Gene3DG3DSA:1.10.3180.103.3E-67154285IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167681.31E-57159283IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MVEFHEEESD RIEPFSPVAE EEEDDFRSLQ EDEEEISYDD LKKRMWKDRL RMQKLKKQRD  60
EESETQARED ASRRKKMARA QDSILKYMVK IMEVCKGQGF VYGIVPNKGK PVTGSSDSLR  120
YWWKEKVRFD QNAPLAISEY LPLLEQSLPA TGNSTASFIH LLQDLQDTTL GSLLSALMQH  180
CIPPQRRFPL ERGIAPPWWP TGREVWWGEQ GMVAKEQGPP PYKKPHDLKK AWKVSALAAV  240
IKHMSPNVHQ IRRLVKQSKC LQDKMMAKET ATWSKVLNQE ELLLQLTEKC LKISASDEED  300
NKEDEQGHSK STSGKGKYIS ETSSPRSSRQ AKRKCVAAEE VSLNTLRSCH NLISQKTQVG  360
QDREIDDQGP DFPVNNLFLS SPIGPIRILG VENVDDTCRD VSSSPPDWLR IELPRTSQTD  420
YVDANYEAGD QAHQEGHNWF TTSALGDLNY QKGIEYLAMD GAFEVIRENM DISLNPLVQE  480
NNNNADGASS SIWDMVYEQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A1e-591572831126Protein ETHYLENE INSENSITIVE 3
4zds_B1e-591572831126Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_20.234
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021903878.10.0putative ETHYLENE INSENSITIVE 3-like 4 protein
SwissprotQ9LX161e-129EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLV4SW511e-151V4SW51_9ROSI; Uncharacterized protein (Fragment)
STRINGevm.model.supercontig_20.2340.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58792747
Representative plantOGRP5631682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65100.11e-125EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]