PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_200.10
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 164aa    MW: 18721.4 Da    PI: 7.7412
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_200.10genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM59.21.4e-1871173116
                           NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82 
                                    G++F P+deel+ + L+ k++g   +   +++ke+d+y+ ePw      k e++  y F++ +kk+++ +r  r++ sg+
  evm.model.supercontig_200.10   7 IGYHFTPSDEELL-QILAIKLRGGYeILGGHAMKEIDVYQKEPWLVFD--KDESEPFYVFTSLKKKSSSRSRMDRKVGSGT 84 
                                   69***********.779999988874444467************9952..33455779*********************** PP

                           NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkg 116
                                   W+   +  +v+++++++vg kk+L+f +++++k 
  evm.model.supercontig_200.10  85 WRMERS-IDVVDQGDKVVGYKKMLTFEEEKKKKK 117
                                   **8766.777777*************97766653 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100518.215160IPR003441NAC domain
SuperFamilySSF1019412.62E-196117IPR003441NAC domain
PfamPF023652.9E-97113IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MEGAWNIGYH FTPSDEELLQ ILAIKLRGGY EILGGHAMKE IDVYQKEPWL VFDKDESEPF  60
YVFTSLKKKS SSRSRMDRKV GSGTWRMERS IDVVDQGDKV VGYKKMLTFE EEKKKKKNIE  120
NVLPSNGVSG HKLQEITLAL ELQGSLPYRK EDYIGGIRDL FNA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_200.10
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021887288.11e-117NAC domain-containing protein 19-like
STRINGevm.model.supercontig_200.101e-116(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5881218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52890.12e-07NAC domain containing protein 19