PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_203.5
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 233aa    MW: 26076.7 Da    PI: 9.9007
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_203.5genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.76.6e-11113160455
                                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                  +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++YI+sLq
  evm.model.supercontig_203.5 113 SHSLAERARREKISERMKILQDLVPGC----SKVIGKALVLDEIINYIQSLQ 160
                                  8*************************9....566*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-18107180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.79E-10107164No hitNo description
PROSITE profilePS5088815.834109159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-18109180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-8113160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-10115165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MLLLCMRAGF SLERWGTCFL GRSRVVQERD GQLSANQRLR TLTMIAYFSW WQNDSNGKRM  60
KIVGSKSENS ASKAEVEASS AGGKKPPEQN SKPSEPPKDY IHVRARRGQA TDSHSLAERA  120
RREKISERMK ILQDLVPGCS KVIGKALVLD EIINYIQSLQ RQVEFLSMKL EAVNSRMNMH  180
PTIEGFHSKD LGSQPFDASG MLFGPQPTRE YAQGSESEWL HMQVGGTFER AA*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_203.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021887257.11e-139transcription factor BHLH089-like
SwissprotQ69WS31e-76BH094_ORYSJ; Transcription factor BHLH094
TrEMBLS1RTL51e-104S1RTL5_THECC; Basic helix-loop-helix DNA-binding superfamily protein
STRINGevm.model.supercontig_203.51e-173(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18552878
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.13e-72BIG PETAL P