PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_209.13

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

TCP

Protein Properties

Length: 245aa MW: 26578.4 Da PI: 7.2571

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_209.13	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	111.8	9.6e-35	23	120	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec...e 74 ++kkdrhski T++g++dRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l+++ se+ + evm.model.supercontig_209.13 23 TAKKDRHSKILTSKGPKDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKSAIDKLNQLppqenH----SESpgyN 99 78**************************************************************533220....3332333 PP TCP 75 aesssssasnsssg.........k 89 ++s + +s + + evm.model.supercontig_209.13 100 PASTINFQS---YPqdiiistnpN 120 333333333...222334443321 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.5E-31	23	96	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	31.19	25	83	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MGMKSNGGDN ILNFNGGNIL RSTAKKDRHS KILTSKGPKD RRVRLSAHTA IQFYDVQDRL 60 GYDRPSKAVD WLINKAKSAI DKLNQLPPQE NHSESPGYNP ASTINFQSYP QDIIISTNPN 120 RTQDLGLSLQ SFQNSPLNTS HISSTDQTQF LNSAPVGFVS NFQRSMVGWS STSPLPASQR 180 EIFGQGLTSF PQSGDDMPIG SAIVGTRYVS DGLPAFHFPF LIHGEEESGG VSDTPSSSPP 240 DSNH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	4e-20	30	83	1	54	Putative transcription factor PCF6
5zkt_B	4e-20	30	83	1	54	Putative transcription factor PCF6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_209.13

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021887176.1	1e-179	transcription factor TCP10-like
Swissprot	O82277	1e-39	TCP10_ARATH; Transcription factor TCP10
TrEMBL	A0A1Q3C6T3	3e-71	A0A1Q3C6T3_CEPFO; TCP domain-containing protein
STRING	evm.model.supercontig_209.13	1e-178	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14158	19	24
Representative plant	OGRP180	15	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31070.1	5e-42	TCP domain protein 10

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_209.13

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375]