PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_209.41
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family Trihelix
Protein Properties Length: 239aa    MW: 26785.5 Da    PI: 10.5501
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_209.41genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix39.71.3e-1215110186
                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..........rergferspkqCkekwenlnkrykkikegekkr 71 
                                   +W+++ + +Lie   ++  +l+rg+l++++W+ev++++           + +  r+ +qCk++++ l+k+yk +k++  + 
  evm.model.supercontig_209.41  15 CWSEDATFTLIESWGDRFLQLNRGNLRQKHWQEVANAVndrhvhvsaaGKPQPFRTDIQCKNRIDTLKKKYKIEKARVLDS 95 
                                   7*************************************88888887653333357889***************99987666 PP

                      trihelix  72 tsessstcpyfdqle 86 
                                       +s++ +f  l+
  evm.model.supercontig_209.41  96 GGSYTSSWLFFPGLD 110
                                   566667899998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.1E-2314112No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MDAVAGTPSS GRDDCWSEDA TFTLIESWGD RFLQLNRGNL RQKHWQEVAN AVNDRHVHVS  60
AAGKPQPFRT DIQCKNRIDT LKKKYKIEKA RVLDSGGSYT SSWLFFPGLD ALLGPNFPTA  120
GTSPPVTIPK FTPPALAISP IPSSRSSGGS GSTRRRKRTR TVESEVGYRE LADAIDRLGE  180
IYKRVEERKQ KQMVELEKHR MQFAKDLECQ RMQLFVETQV QLHKLKRAAA KRSSAGKT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_209.41
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021887166.11e-152trihelix transcription factor ASIL2 isoform X2
SwissprotQ9LJG84e-33ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A371GYU84e-88A0A371GYU8_MUCPR; Trihelix transcription factor ASIL2 (Fragment)
STRINGevm.model.supercontig_209.411e-178(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96352334
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.15e-52sequence-specific DNA binding transcription factors