PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_21.100

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

LBD

Protein Properties

Length: 233aa MW: 24956.2 Da PI: 8.6603

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_21.100	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	96.2	3.4e-30	2	104	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGa 76 +C++C+vlr++C+++Cvl+ ++ +++q +++ +++k+FG+s +++l++a+p+++r+++++sl+yeA+ r+ +Pv+Ga evm.model.supercontig_21.100 2 SCNGCRVLRKGCSENCVLRSCLhwiesAEAQGNATLFLAKFFGRSDLMSLISAVPQSQRPALFQSLLYEACGRTVNPVNGA 82 6*******************9999777889********************************************* PP DUF260 77 vgvilklqqqleqlkaelallk 98 vg++++++++++q+++e++l++ evm.model.supercontig_21.100 83 VGLLSTGNWHVCQAAVETVLAG 104 **************998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.881	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.1E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MSCNGCRVLR KGCSENCVLR SCLHWIESAE AQGNATLFLA KFFGRSDLMS LISAVPQSQR 60 PALFQSLLYE ACGRTVNPVN GAVGLLSTGN WHVCQAAVET VLAGGPLRPI PGVLTGAWTA 120 NSNESSDGFS AVACTGRSAY PQSSRPSITS HASWEGREPS DLGLSLTLRG RRGRGRSCSQ 180 VERPNVYPQP SFYSGESEVT TMTMRTTASF EGGGDDRRMR GVSERKLLNL FV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_21.100

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021903483.1	1e-170	LOB domain-containing protein 37-like
Swissprot	Q9SZE8	8e-66	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	A0A067LAV8	2e-86	A0A067LAV8_JATCU; Uncharacterized protein
TrEMBL	A0A1R3H2K1	2e-86	A0A1R3H2K1_COCAP; Uncharacterized protein
STRING	evm.model.supercontig_21.100	1e-170	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM821	28	122
Representative plant	OGRP403	16	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	6e-67	LOB domain-containing protein 37

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_21.100