PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_21.170
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family WOX
Protein Properties Length: 223aa    MW: 25412.9 Da    PI: 10.2608
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_21.170genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.53.5e-2184143357
                                   --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                      Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                   +R+++t+eq+ +Le l++   r+p+a+++e+++ +l    +++ ++V++WFqN++a+e++
  evm.model.supercontig_21.170  84 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITVQLgkygKIEGKNVFYWFQNHKARERQ 143
                                   7*****************99**************************************97 PP
2Wus_type_Homeobox117.37.2e-3884145465
             Wus_type_Homeobox   4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                                   tRW+Pt+eQi iLe+ly+ G+rtPn+++i++it +L +yGkie+kNVfyWFQN+kaRerqkq
  evm.model.supercontig_21.170  84 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITVQLGKYGKIEGKNVFYWFQNHKARERQKQ 145
                                   8***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.13E-1377149IPR009057Homeodomain-like
PROSITE profilePS500719.99379144IPR001356Homeobox domain
SMARTSM003893.6E-781148IPR001356Homeobox domain
PfamPF000467.6E-1984143IPR001356Homeobox domain
CDDcd000862.65E-484145No hitNo description
Gene3DG3DSA:1.10.10.608.8E-885143IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0007165Biological Processsignal transduction
GO:0010067Biological Processprocambium histogenesis
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MKVHQLARGL ITTWDHEPSL TLGCKRLRPL APKLAATTSD SAAAVSAAFD LKSFIRPESG  60
PRKLGSSDDH KKDSPPVETH PGGTRWNPTQ EQIGILEMLY RGGMRTPNAQ QIEQITVQLG  120
KYGKIEGKNV FYWFQNHKAR ERQKQKRNSL GITHSPRTPP TIIANIVSFN PRREMVEREE  180
DSAYKRKCRS WGFQSLELEE TRRCKEEENR TLELFPLHPE GR*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_21.170
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021903560.11e-166WUSCHEL-related homeobox 4
SwissprotQ6X7J92e-83WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBLA0A061FCE51e-117A0A061FCE5_THECC; WUSCHEL related homeobox 4
STRINGevm.model.supercontig_21.1701e-166(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59802747
Representative plantOGRP71671117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.12e-78WUSCHEL related homeobox 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]
  3. Guo X, et al.
    Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation.
    PLoS Pathog., 2017. 13(2): p. e1006142
    [PMID:28158306]
  4. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  5. Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O
    WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees.
    New Phytol., 2017. 215(2): p. 642-657
    [PMID:28609015]
  6. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]