PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_21.173
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 101aa    MW: 11619.1 Da    PI: 7.1437
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_21.173genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM39.31.9e-121592164
                           NAM  1 lppGfrFhPtdeelvveyLkkkvegkk........leleevikevdiykvePwdLpk......kvkaeekewyfFskr 64
                                  +ppG+rF P++e+l+++yL+ k +++          +  + ike+++y++eP +Lp        +ka++++w+ ++ r
  evm.model.supercontig_21.173 15 MPPGCRFYPSEEQLLCCYLTGKNRNTIgdedgcegSNGYDLIKELNLYDYEPYELPDsacfsyGCKARKRHWFCYTIR 92
                                  79******************999887755566555444458**************94477766555677788888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-121192IPR003441NAC domain
PROSITE profilePS5100514.86115100IPR003441NAC domain
PfamPF023654.9E-51690IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MEHSRCMRES TSFKMPPGCR FYPSEEQLLC CYLTGKNRNT IGDEDGCEGS NGYDLIKELN  60
LYDYEPYELP DSACFSYGCK ARKRHWFCYT IRVLKGSSAR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_21.173
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021903462.13e-70LOW QUALITY PROTEIN: NAC domain-containing protein 72-like
TrEMBLA0A314Z5D21e-33A0A314Z5D2_PRUYE; NAC domain-containing protein 104-like isoform X1
TrEMBLA0A314ZAX43e-33A0A314ZAX4_PRUYE; NAC domain-containing protein 104-like isoform X1
STRINGevm.model.supercontig_21.1731e-69(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17192810
Representative plantOGRP1150445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52890.13e-11NAC domain containing protein 19