PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_21.35
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GATA
Protein Properties Length: 182aa    MW: 19506.4 Da    PI: 4.6622
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_21.35genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.71.1e-154177135
                         GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
                                 C++Cg+ +  Tp +Rrgp g++tLCnaCGl+++ kg+
  evm.model.supercontig_21.35 41 CQHCGVGEnnTPAMRRGPAGPRTLCNACGLMWANKGT 77
                                 ****998888************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.9E-103588IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.28E-113686No hitNo description
Gene3DG3DSA:3.30.50.108.8E-153982IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.93E-154084No hitNo description
PROSITE patternPS0034404168IPR000679Zinc finger, GATA-type
PfamPF003201.6E-134177IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MHRKNGQFAS LKESSGGSSW DSTQSCLHDG TPRPETVIRR CQHCGVGENN TPAMRRGPAG  60
PRTLCNACGL MWANKGTLRD LSKGGRNLSI DQNEPETPVD VKPSIMEGEF SANPDQHGSP  120
EDLSKALTER PSKDLHGAAN EVTNSLPMTI VHSSADDDEQ EPLVELANPS DTDIDIPSSF  180
D*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_21.35
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021903331.11e-132GATA transcription factor 24
SwissprotQ8GXL74e-27GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A067GNE41e-102A0A067GNE4_CITSI; Uncharacterized protein
TrEMBLV4V5081e-102V4V508_9ROSI; Uncharacterized protein
STRINGevm.model.supercontig_21.351e-132(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122941429
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.23e-24ZIM-LIKE 2
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]