PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_21.50
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MIKC_MADS
Protein Properties Length: 183aa    MW: 20695.1 Da    PI: 6.1323
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_21.50genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.54.7e-25958150
                                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                 k+ien   rqvtf+kRr+g+lKKA+ELSvLCda++ + ifss+gklye +
  evm.model.supercontig_21.50  9 KKIENPVHRQVTFCKRRAGLLKKAKELSVLCDADIGLFIFSSHGKLYELA 58
                                 68*********************************************965 PP
2K-box47.86.3e-176815514100
                        K-box  14 aeslqqelakLkkeienLqreqRhll.GedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                                  +   ++e  +Lk+eie+Lq+ +  +  Ge  e+++l eL  Le++Le  + +iRs+K++++ ++i+ l++ke  l  +n++L
  evm.model.supercontig_21.50  68 ERDTKEETIRLKQEIEMLQKGLGYMFgGEAAETMTLDELLILEKHLEIWICHIRSTKMDIISQEIQLLKNKEGILTAANMYL 149
                                  55678999***********997776636999*************************************************** PP

                        K-box  95 rkklee 100
                                  ++k+ee
  evm.model.supercontig_21.50 150 QEKIEE 155
                                  ****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.62E-27174IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.857161IPR002100Transcription factor, MADS-box
SMARTSM004323.1E-36160IPR002100Transcription factor, MADS-box
CDDcd002655.83E-38269No hitNo description
PRINTSPR004045.3E-27323IPR002100Transcription factor, MADS-box
PfamPF003199.3E-231056IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-273859IPR002100Transcription factor, MADS-box
PfamPF014861.2E-1867153IPR002487Transcription factor, K-box
PROSITE profilePS5129712.18468159IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MARGKIQIKK IENPVHRQVT FCKRRAGLLK KAKELSVLCD ADIGLFIFSS HGKLYELATN  60
GTMQELIERD TKEETIRLKQ EIEMLQKGLG YMFGGEAAET MTLDELLILE KHLEIWICHI  120
RSTKMDIISQ EIQLLKNKEG ILTAANMYLQ EKIEENTTDY ATLLGSSTSS CPLTLPNEMF  180
QA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-15159159MEF2C
5f28_B2e-15159159MEF2C
5f28_C2e-15159159MEF2C
5f28_D2e-15159159MEF2C
6byy_A2e-15159159MEF2 CHIMERA
6byy_B2e-15159159MEF2 CHIMERA
6byy_C2e-15159159MEF2 CHIMERA
6byy_D2e-15159159MEF2 CHIMERA
6bz1_A2e-15159159MEF2 CHIMERA
6bz1_B2e-15159159MEF2 CHIMERA
6bz1_C2e-15159159MEF2 CHIMERA
6bz1_D2e-15159159MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_21.50
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021903565.11e-127agamous-like MADS-box protein AGL12
SwissprotA2YQK96e-70MAD26_ORYSI; MADS-box transcription factor 26
SwissprotQ0J8G86e-70MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBLV4T3Q36e-86V4T3Q3_9ROSI; Uncharacterized protein
STRINGevm.model.supercontig_21.501e-131(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70522641
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.14e-67AGAMOUS-like 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Lee S, et al.
    Further characterization of a rice AGL12 group MADS-box gene, OsMADS26.
    Plant Physiol., 2008. 147(1): p. 156-68
    [PMID:18354041]
  3. Khong GN, et al.
    OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice.
    Plant Physiol., 2015. 169(4): p. 2935-49
    [PMID:26424158]