PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_21.7
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 220aa    MW: 24275.5 Da    PI: 9.3955
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_21.7genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH444.1e-143481254
                                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                         HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                                +++h+e+ErrRR+riN  +++Lr+llP       +K +Ka+ L ++v+++++L
  evm.model.supercontig_21.7 34 CKSHKEAERRRRQRINAHLSTLRSLLPDT-----TKTDKATLLAEVVHHVREL 81
                                789*************************9.....8***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.6693281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.11E-123284No hitNo description
PfamPF000101.5E-113481IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-133584IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-133687IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-123887IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2608.6E-5130192No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MEMDPFRSSC YCEYGRNDDV SVASSEKKST TEACKSHKEA ERRRRQRINA HLSTLRSLLP  60
DTTKTDKATL LAEVVHHVRE LKRKAADVAR RNLDGNGLEP DPSTWPFPGE LDEATLSNCD  120
GGATGLVKAT LCCEDRPGLN RDLGRAFRSC RAKPVRADMM TVGGRIKSVV VTQWAGNGEK  180
EIEALKRALR EVVENRVPGS GMPRYDKRAR ICGSFGNRG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_21.7
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021903378.11e-161transcription factor bHLH30-like
TrEMBLA0A2I4H5L31e-84A0A2I4H5L3_JUGRE; transcription factor bHLH106-like isoform X3
STRINGevm.model.supercontig_21.71e-161(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1885867
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.13e-32bHLH family protein