PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_212.14
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 147aa    MW: 16289.5 Da    PI: 10.5979
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_212.14genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.000376082123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ++C+ C+k+Fs++  L  H  +H
  evm.model.supercontig_212.14 60 FECKACKKTFSSHQALGGHRASH 82
                                  89**************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.9E-65786No hitNo description
PfamPF139128.7E-106084IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.4716087IPR007087Zinc finger, C2H2
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MANCLMMLSN STADDQSSES ATSKEEQEIR RVKFKSSLNS SAPILEKKKK FSDWISKGMF  60
ECKACKKTFS SHQALGGHRA SHKKVKGCFA ARVHQVDRLA DQERHDVMRS FDQGTSSNIT  120
TATITITSST LNKKKSKVHR TGFGWS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_212.14
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021887095.11e-94zinc finger protein ZAT5-like
TrEMBLA0A061DW893e-29A0A061DW89_THECC; C2H2-type zinc finger family protein
STRINGevm.model.supercontig_212.141e-103(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13535616
Representative plantOGRP2521820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.14e-13C2H2-like zinc finger protein