PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_212.3
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 206aa    MW: 23232.4 Da    PI: 10.579
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_212.3genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.82.9e-164287555
                                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                          HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                 hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  evm.model.supercontig_212.3 42 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 87
                                 9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-1935102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.8153786IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-144287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.64E-154291No hitNo description
Gene3DG3DSA:4.10.280.101.1E-184295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-184392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MNGKLKFLAI LQRDTCDEEE KKLKARGKSS ASTKRSRAAA IHNQSERKRR DKINQRMKTL  60
QKLVPNSSKT DKASMLDEVI EYLKQLQAQV HMMSRMSMSP MMMPMTMQQQ LQMSMMTPMG  120
LGMGMGMMDI TRPNIPPVLP NPFIPIMPWD PSLERSQPAS TPIVPDPLSA FLSCHSQPMS  180
MDVYGRMAAM YQQLLQQPPI SNSKT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14550ERKRRD
24651RKRRDK
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_212.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021887097.11e-137transcription factor UNE10 isoform X1
SwissprotQ8GZ383e-54UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A2C9VTC15e-83A0A2C9VTC1_MANES; Uncharacterized protein
STRINGevm.model.supercontig_212.31e-148(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39192451
Representative plantOGRP80031014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.13e-28bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]