PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_2145.1

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

Trihelix

Protein Properties

Length: 434aa MW: 50120.6 Da PI: 6.4737

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_2145.1	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	84.5	1.3e-26	118	209	1	84
trihelix 1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.ts 73 +Wt+++v++Li+a+++++e+ +++ +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ ++ evm.model.supercontig_2145.1 118 KWTDKMVRLLITAVSYIGEDASSDYrrkfsvlQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSC 198 7************99999997633446677********************************************558 PP trihelix 74 essstcpyfdq 84 +++++ +++d evm.model.supercontig_2145.1 199 QVVENPVLLDL 209 88888777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.1E-24	116	237	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MEGGLSQGGM IPGGSSFSGL DLQTSIRVHN QPQHPTTIHQ HHHRQGSSVH PSLHEGFPLT 60 MGSMQGCDQT MSMADYNKVE RGKNSVSDED EPSFTEEGGD GHNDPNKGKK GSPWQRVKWT 120 DKMVRLLITA VSYIGEDASS DYRRKFSVLQ KKGKWKSVSK VMAERGYHVS PQQCEDKFND 180 LNKRYKKLND MLGRGTSCQV VENPVLLDLI DFLSEKEKDD VRKILSSKHL FYEEMCSYHN 240 GNRLHLPHDP ALQRSLQLAL RSRDDHDNDD LRRHQNDDPD EEDQEVEADE HDEYEEHRGL 300 HAGVSGSLKR SRQGQGQEDV CFPNSWNSQD CNKGPYPHQH TCQTDTNQVL TESSRAAWLQ 360 KQWIESRSLQ IEEQKLQIQA DMLELEKQRF KWERFSKKRD RELERMRMEN ERMKLENERM 420 ALELKRRELG GDL*

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MEGGLSQGGM IPGGSSFSGL DLQTSIRVHN QPQHPTTIHQ HHHRQGSSVH PSLHEGFPLT  60
MGSMQGCDQT MSMADYNKVE RGKNSVSDED EPSFTEEGGD GHNDPNKGKK GSPWQRVKWT  120
DKMVRLLITA VSYIGEDASS DYRRKFSVLQ KKGKWKSVSK VMAERGYHVS PQQCEDKFND  180
LNKRYKKLND MLGRGTSCQV VENPVLLDLI DFLSEKEKDD VRKILSSKHL FYEEMCSYHN  240
GNRLHLPHDP ALQRSLQLAL RSRDDHDNDD LRRHQNDDPD EEDQEVEADE HDEYEEHRGL  300
HAGVSGSLKR SRQGQGQEDV CFPNSWNSQD CNKGPYPHQH TCQTDTNQVL TESSRAAWLQ  360
KQWIESRSLQ IEEQKLQIQA DMLELEKQRF KWERFSKKRD RELERMRMEN ERMKLENERM  420
ALELKRRELG GDL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_2145.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021889065.1	0.0	uncharacterized protein LOC110808035
TrEMBL	A0A1R3FYZ5	0.0	A0A1R3FYZ5_9ROSI; Putative transcription factor
STRING	evm.model.supercontig_2145.1	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5042	27	52
Representative plant	OGRP2796	13	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-117	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_2145.1