PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_224.10
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family HSF
Protein Properties Length: 278aa    MW: 32376.4 Da    PI: 7.102
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_224.10genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.51.2e-34331242102
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl k+y ++ed+e+++++sw+ +g+ fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++         weF 
  evm.model.supercontig_224.10  33 FLVKTYMLVEDPETDDVVSWNGEGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATRR---------WEFC 104
                                   9****************************************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkks 102
                                   ++ F+kgkkell++i+r+ks
  evm.model.supercontig_224.10 105 NDMFQKGKKELLCNIRRRKS 124
                                   ******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-3625117IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.18E-3329122IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.5E-5429122IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.1E-3133122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-183356IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-187183IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407296IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-188496IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MEVISDCDRN LIVSHKGLVL DQYVMRKSTP PPFLVKTYML VEDPETDDVV SWNGEGTGFV  60
VWQPAEFARD LLPTLFKHSN FSSFVRQLNT YGFRKVATRR WEFCNDMFQK GKKELLCNIR  120
RRKSWPNSNK QVSTPPQEQK QEHHHQVDDL DQRSSSTSSS GYVILMDENK RLKNENGALS  180
SELTTVKRKC KELLDLVNHY SHFHDHHDHH HHHDVIIDDD DENDGDIDDE RPLMLFGVRL  240
EIQGVDHQRK RKMNIRKRSA AEIYQNATNV LLPQSCK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-202812215120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247252QRKRKM
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_224.10
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021886861.10.0heat stress transcription factor B-3
SwissprotO222302e-71HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLB9II855e-95B9II85_POPTR; Uncharacterized protein
STRINGevm.model.supercontig_224.100.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108142731
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.13e-67heat shock transcription factor B3