PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_224.4
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family AP2
Protein Properties Length: 427aa    MW: 47001.6 Da    PI: 8.5904
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_224.4genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.9e-1767126155
                          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                  s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  evm.model.supercontig_224.4  67 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 126
                                  57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.4E-1367126IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-1767135IPR016177DNA-binding domain
SMARTSM003801.9E-2568140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-1568135IPR001471AP2/ERF domain
PROSITE profilePS5103220.12668134IPR001471AP2/ERF domain
PRINTSPR003674.2E-56980IPR001471AP2/ERF domain
PRINTSPR003674.2E-5116136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MASASSSDPG LKPELGVGGG GETSEAVVAN DQLLLYRGLK KAKKERGCTA KERISKMPPC  60
TAGKRSSIYR GVTRHRWTGR YEAHLWDKST WNQNQNKKGK QVYLGAYDDE EAAARAYDLA  120
ALKYWGPGTL INFPVTDYTR DLEEMQNVSR EEYLASLRRK SSGFSRGISK YRGLTSSRWD  180
SSFGRGAAPE YFNSIHYVAG DDPGTESDFL SNFCIERKID LTSYIKWWGT NKTRQADCSS  240
KSSEETKHGC AEDIGGELKT LDWAVQATEP YEMPRLGMFI KGKTPKGSTV SALSILSQSA  300
AYKSLQEKAL KKEKKDSDKE DNENKNTINR PDYGKAVEKS VSHEGGNESL GAALGMGGGL  360
PLQRNMYPLA PILSAPLVTS YNTIDPLADP ILWTSLVPIL PTGSSRNPEV TKTETSSTYT  420
FFQPEE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_224.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021886868.10.0AP2-like ethylene-responsive transcription factor At2g41710 isoform X1
SwissprotQ8GWK21e-177AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A1U8M4W80.0A0A1U8M4W8_GOSHI; AP2-like ethylene-responsive transcription factor At2g41710
STRINGevm.model.supercontig_224.40.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108152433
Representative plantOGRP91071013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-163AP2 family protein