PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_23.81
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family CPP
Protein Properties Length: 186aa    MW: 19519.2 Da    PI: 8.8658
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_23.81genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.44.5e-16443140
                          TCR  1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
                                 k++kgC+Ckks C kkYCeCf+a+  Cse+CkC dCkN e
  evm.model.supercontig_23.81  4 KHNKGCHCKKSGCFKKYCECFQANILCSENCKCLDCKNFE 43
                                 589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163419.958144IPR005172CRC domain
SMARTSM011141.6E-18445IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.3E-12742IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MLGKHNKGCH CKKSGCFKKY CECFQANILC SENCKCLDCK NFEGSEERQA LFHGDHANNM  60
AYIQQAANAA ITGAIGSSGY ASPPVSKRRK GQELLFGPAA KDPSISRIGH FQQANNIRAA  120
APSSSLSSVS VARAGGNAAS GSSKFTYRSL LADIIQPQDL KELCSVLVVV AGEAAKSLAG  180
SITLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A9e-1645383132Protein lin-54 homolog
5fd3_B9e-1645383132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_23.81
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021903130.11e-126protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD14e-91TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A1Q3CDW51e-106A0A1Q3CDW5_CEPFO; CXC domain-containing protein
STRINGevm.model.supercontig_23.811e-133(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17832884
Representative plantOGRP14691745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.15e-81Tesmin/TSO1-like CXC domain-containing protein