PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_233.20
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ARR-B
Protein Properties Length: 225aa    MW: 25548.2 Da    PI: 9.0951
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_233.20genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like28.92.5e-09197220124
                       G2-like   1 kprlrWtpeLHerFveaveqLGGs 24 
                                   kprl W++eLH++Fv+av++L Gs
  evm.model.supercontig_233.20 197 KPRLSWNSELHDKFVDAVQRLAGS 220
                                   79*******************996 PP
2Response_reg65.32.9e-22291381109
                                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEE CS
                  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvt 78 
                                   vl +d + + ++ l  +l++ +y +v++++ ++eal+ l++k+  +D++++D++  + + G+ell+ i  e  +lp+i+v+
  evm.model.supercontig_233.20  29 VLAIDSNIVCLKYLVALLQRCQY-QVTATTIASEALAELRDKRnkYDVVITDVNRYNdVGGFELLEIISLEM-DLPVIMVS 107
                                   67888999999************.***************888888********99988********998755.9******* PP

                                   STTTHHHHHHHHHTTESEEEESS--HHHHHH CS
                  Response_reg  79 ahgeeedalealkaGakdflsKpfdpeelvk 109
                                   + ++++ + +++k Ga+d++ Kp   +e+ +
  evm.model.supercontig_233.20 108 SDDNKDNIMKCIKHGARDYILKPLRLQEIKN 138
                                   *************************999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.3E-3126158No hitNo description
SuperFamilySSF521723.42E-2526149IPR011006CheY-like superfamily
SMARTSM004481.5E-1927140IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011034.36828144IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.2E-1729138IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.51E-1730143No hitNo description
Gene3DG3DSA:1.10.10.608.2E-7195219IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MSKNEAEFKV SSLEDNGEES SFDPREVRVL AIDSNIVCLK YLVALLQRCQ YQVTATTIAS  60
EALAELRDKR NKYDVVITDV NRYNDVGGFE LLEIISLEMD LPVIMVSSDD NKDNIMKCIK  120
HGARDYILKP LRLQEIKNIW QHVVRKKADH SAEKSGDRKE IRIMDQHRKS NSQMIMIKKR  180
IDGNLKSGAS SSSRGKKPRL SWNSELHDKF VDAVQRLAGS VINN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_233.20
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011044007.12e-69PREDICTED: two-component response regulator ARR10-like
TrEMBLB9IM112e-67B9IM11_POPTR; Uncharacterized protein
STRINGevm.model.supercontig_233.201e-164(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.12e-45response regulator 10