PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_235.5
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C3H
Protein Properties Length: 271aa    MW: 28512.4 Da    PI: 8.6307
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_235.5genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.51.1e-0878103227
                                  -S---SGGGGTS--TTTTT-SS-SSS CS
                      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                  kt+ C+ +     Ck+Gd+C+FaHg+
  evm.model.supercontig_235.5  78 KTRMCNKYNTAEGCKFGDKCHFAHGE 103
                                  89**********************96 PP
2zf-CCCH27.94e-09237262127
                                  --S---SGGGGTS--TTTTT-SS-SSS CS
                      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                  +kt+lC++f + G C +GdrC+FaHg+
  evm.model.supercontig_235.5 237 FKTKLCDNFTK-GCCTFGDRCHFAHGM 262
                                  69*********.*************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.042937IPR000571Zinc finger, CCCH-type
SMARTSM003561.7936IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-61035IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-71134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-874107IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3176104IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-1476108IPR000571Zinc finger, CCCH-type
SMARTSM003560.02576103IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-578103IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.21E-15135216IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.108.5E-16143213IPR004088K Homology domain, type 1
SMARTSM003227.4E-12143213IPR004087K Homology domain
PROSITE profilePS5008414.194144208IPR004088K Homology domain, type 1
PfamPF000131.9E-11146210IPR004088K Homology domain, type 1
CDDcd001056.59E-14148208No hitNo description
Gene3DG3DSA:4.10.1000.103.2E-15234267IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.211236263IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-8236266IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-7236262IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-7237262IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MESFPSGIGS KSKPCTKFFS TSGCPFGEGC HFLHYVPGGF KTVSQMLNLG GNAAIPPAPR  60
NPVVPPSFAD GSSPTTVKTR MCNKYNTAEG CKFGDKCHFA HGEWELGKPS GPAYEDPHAM  120
GPGRMGGRIE PPQGHGAAAS FGASATAKIS VDASLAGAII GKNGVNSKQI CRVTGAKLSI  180
REHETDPNLR NIELEGTFDQ IKQASAMVRE LIVNVSSGSG MSMKNQSMLG SGPSNNFKTK  240
LCDNFTKGCC TFGDRCHFAH GMEELRKSGM *
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_235.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3936046e-38FQ393604.1 Vitis vinifera clone SS0AFA25YC11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021912694.10.0zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-114C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2C9UEI61e-163A0A2C9UEI6_MANES; Uncharacterized protein
STRINGevm.model.supercontig_235.50.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.13e-55C3H family protein