PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_239.1
Common NamePALM1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 212aa    MW: 22929.8 Da    PI: 6.5063
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_239.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.8e-056183123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                 y+C+ C + F++   L  H+++H
  evm.model.supercontig_239.1 61 YTCTFCRREFRSAQALGGHMNVH 83
                                 9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.19E-65888No hitNo description
Gene3DG3DSA:3.30.160.608.7E-45986IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00666183IPR015880Zinc finger, C2H2-like
PfamPF139121.5E-56184IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1576188IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MAAELGLLSL TQLRNIASLS PGAWMWNPTQ VAEQEDDSWE VRAFEQDTGN IMGTTWPPRS  60
YTCTFCRREF RSAQALGGHM NVHRRDRARL HQSSAPQPPG RAATSMIIPT QDLTANGGLC  120
LLYQLPNPKG ILAAPTGDTI DSPSTILSIS PYPSHHLITP PLNFTLSPSS TSTKAQSPWV  180
KSADVSANRL ITADHSAAME EVDLELRLGP S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-135683229superman protein
2l1o_A1e-135683229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_239.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM4533400.0HM453340.1 Carica papaya palmate-like pentafoliata 1 transcription factor (PALM1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021912676.11e-155zinc finger protein 10
TrEMBLE2IBQ41e-153E2IBQ4_CARPA; Palmate-like pentafoliata 1 transcription factor (Fragment)
STRINGevm.model.supercontig_239.11e-154(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52842647
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.14e-47C2H2 family protein