PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_24.41

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

BES1

Protein Properties

Length: 285aa MW: 31109.5 Da PI: 9.6066

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_24.41	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	158.4	4.8e-49	81	228	2	145
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaag 83 ++g+++++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+reAGw+ve+DGttyr++ p+ ++ evm.model.supercontig_24.41 81 SKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWTVEPDGTTYRQSPPPH----QMA 158 789****************************************************************876666....777 PP DUF822 84 ssasaspesslq.sslkssalaspvesysaspksssfpspssldsislasa.......asllpvlsvlsl 145 s+ +s+es+l s k+s+++ ++ +++ ++ ++++sp+slds+ +++ +s +p+ sv++l evm.model.supercontig_24.41 159 SFPVRSVESPLPsASFKNSSVKPALDGQQSILRINESLSPASLDSVVITERdtrseryTSASPINSVECL 228 88888888888878899*****************************9987777766666666666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	6.5E-50	81	228	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MNQLNPHSTP TSNADPIEPR PNSIDNFPQA HPVQPQPQTR RPRGFAATAA AAASMAPTTS 60 TTPTITTTSN NNSSGNSSTS SKGKREREKE KERTKLRERH RRAITSRMLA GLRQYGNFPL 120 PARADMNDVL AALAREAGWT VEPDGTTYRQ SPPPHQMASF PVRSVESPLP SASFKNSSVK 180 PALDGQQSIL RINESLSPAS LDSVVITERD TRSERYTSAS PINSVECLQA DQLMGQSSQD 240 CFFSLVLSRP KSHPEQNQQL PSLPPPNPWP MDEISESPGH HNSR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_24.41

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021903090.1	1e-163	beta-amylase 8
Swissprot	Q9FH80	2e-60	BAM8_ARATH; Beta-amylase 8
TrEMBL	A0A0K0PUA9	8e-74	A0A0K0PUA9_CAMSI; Beta-amylase
STRING	evm.model.supercontig_24.41	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10888	28	32
Representative plant	OGRP9765	11	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.1	1e-50	beta-amylase 2

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_24.41

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]