PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_249.9
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family Whirly
Protein Properties Length: 240aa    MW: 26733.7 Da    PI: 10.3422
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_249.9genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly198.31e-61631991137
                       Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaa 82 
                                  s+yk+kaal++++v+ptf +ldsg l+++r+G ++l++ +a++erkydW+ +q+falsatev+++++l++ +++effhdp++
  evm.model.supercontig_249.9  63 SIYKGKAALSMEPVLPTFAKLDSGGLRVDRRGVMMLTFLPAIGERKYDWQSRQKFALSATEVGSFISLGPTGASEFFHDPSM 144
                                  7********************************************************************************* PP

                       Whirly  83 kgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                                  k+sn+G+v+k+l+v+P++d sG+f++lsv+ns++k+ e+++vPv+ aef v++++
  evm.model.supercontig_249.9 145 KSSNAGQVKKTLSVKPHADASGYFISLSVNNSILKTTERITVPVTSAEFQVMKTA 199
                                  *****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.108.9E-7351220IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.73E-6456220IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.3E-5764198IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MLKLSRCSFA RNLLSNKQFL EYGPDVRDAR YLCAFTSRAG VSTTRQNFTA KGNFAGRVFA  60
PYSIYKGKAA LSMEPVLPTF AKLDSGGLRV DRRGVMMLTF LPAIGERKYD WQSRQKFALS  120
ATEVGSFISL GPTGASEFFH DPSMKSSNAG QVKKTLSVKP HADASGYFIS LSVNNSILKT  180
TERITVPVTS AEFQVMKTAC SFALPHIMGW DWLNNQQHKH REINSMRLDS RALDLEWDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A2e-89552168169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B2e-89552168169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C2e-89552168169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D2e-89552168169Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery. Seems also to be required to prevent break-induced DNA rearrangements in the mitochondrial genome. Can bind to melt double-stranded DNA in vivo. {ECO:0000269|PubMed:18423020, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:22762281}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_249.9
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021912604.11e-180single-stranded DNA-binding protein WHY2, mitochondrial isoform X1
SwissprotQ8VYF71e-94WHY2_ARATH; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A2I4FRC21e-107A0A2I4FRC2_JUGRE; single-stranded DNA-bindig protein WHY2, mitochondrial
STRINGevm.model.supercontig_249.91e-180(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM123582731
Representative plantOGRP23161635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.15e-97WHIRLY 2