PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_25.106
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB_related
Protein Properties Length: 191aa    MW: 20911.8 Da    PI: 10.3926
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_25.106genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.48.9e-1072121248
                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                                   ++WT  E  +lv++v ++G g+W+ I +        Rt  ++k++w+++l
  evm.model.supercontig_25.106  72 QAWTLSEVMKLVEGVSRYGAGRWSEIKKLAFasySYRTSVDLKDKWRNLL 121
                                   79***************************999**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.25866125IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-1468128IPR009057Homeodomain-like
SMARTSM007172.0E-970123IPR001005SANT/Myb domain
PfamPF002492.6E-872121IPR001005SANT/Myb domain
CDDcd116601.65E-2072122No hitNo description
SuperFamilySSF466896.24E-1773131IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MSVRLTCLVD VKMEYDKHFV AEPDKNRQIS VVGTVEGRNV GYRHVDSSGD TSDDNVATVP  60
TSKGGLRRKH HQAWTLSEVM KLVEGVSRYG AGRWSEIKKL AFASYSYRTS VDLKDKWRNL  120
LKASFAQAPS DKGANSRKHA SVPIPAPILL RVRQLAEMQA QVPPNVSSSK LVEVGVGGRS  180
VVESSRSGYL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_25.106
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021903054.11e-118uncharacterized protein LOC110818463
TrEMBLA0A061GCV62e-80A0A061GCV6_THECC; TRF-like 3, putative isoform 2
TrEMBLA0A061GDL38e-80A0A061GDL3_THECC; TRF-like 3, putative isoform 1
STRINGevm.model.supercontig_25.1061e-137(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43642649
Representative plantOGRP16451536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-52TRF-like 6