PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_254.5
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family TALE
Protein Properties Length: 168aa    MW: 19589.3 Da    PI: 7.6361
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_254.5genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.66e-101101442155
                                  HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                     Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                  k +yp++++++ LA+ +gL+++q+ +WF N+R ++
  evm.model.supercontig_254.5 110 KWPYPTEADKTALAETTGLDQKQINNWFINQRKRH 144
                                  569*****************************985 PP
2ELK31.63.6e-116585222
                          ELK  2 LKhqLlrKYsgyLgsLkqEFs 22
                                 LK+ Ll KYsgy++sLkqEFs
  evm.model.supercontig_254.5 65 LKEKLLSKYSGYISSLKQEFS 85
                                 9*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5121310.1966484IPR005539ELK domain
PfamPF037897.0E-106485IPR005539ELK domain
SMARTSM011881.5E-66485IPR005539ELK domain
PROSITE profilePS5007112.61784147IPR001356Homeobox domain
SuperFamilySSF466893.21E-2085161IPR009057Homeodomain-like
SMARTSM003891.5E-1286151IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.7E-2889148IPR009057Homeodomain-like
CDDcd000868.91E-1396148No hitNo description
PfamPF059205.4E-18104143IPR008422Homeobox KN domain
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MESCHPPPCH VPALFILFHH IHNSYYICMH VHADSKGGGS SEEELSGGDE MDVTECSRMV  60
EDRQLKEKLL SKYSGYISSL KQEFSKKKKK GKLPKEARQL LFDWWNLHYK WPYPTEADKT  120
ALAETTGLDQ KQINNWFINQ RKRHWKPSEN MQFAVMDSLY APFYMDT*
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_254.5
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021912548.11e-94homeobox protein knotted-1-like 6
SwissprotQ84JS65e-53KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A438KBK22e-62A0A438KBK2_VITVI; Homeobox protein knotted-1-like 6
STRINGevm.model.supercontig_254.51e-125(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8352785
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.15e-45KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]