PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_26.173

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

WOX

Protein Properties

Length: 226aa MW: 25870.2 Da PI: 7.6282

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_26.173	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.2	2.2e-21	83	143	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t+ ql++Le+ +e+ n +ps+++++e++++l +++e++V++WFqNrRa+ k+ evm.model.supercontig_26.173 83 RQRWNPTSMQLQILESIYEQgNGTPSKQKIKEITNQLaqhgQISEANVYNWFQNRRARSKR 143 89***************99************************************97 PP
2	Wus_type_Homeobox	101.6	5.4e-33	82	145	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW+Pt+ Q++iLe++y++G tP+k++i++it++L+++G+i+++NV++WFQNr+aR+++kq evm.model.supercontig_26.173 82 TRQRWNPTSMQLQILESIYEQGNGTPSKQKIKEITNQLAQHGQISEANVYNWFQNRRARSKRKQ 145 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.4E-17	78	148	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.722	79	144	IPR001356	Homeobox domain
SMART	SM00389	7.8E-13	81	148	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.42E-18	81	147	IPR009057	Homeodomain-like
Pfam	PF00046	2.8E-19	83	143	IPR001356	Homeobox domain
CDD	cd00086	4.87E-13	83	145	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001944	Biological Process	vasculature development
GO:0010072	Biological Process	primary shoot apical meristem specification
GO:0051301	Biological Process	cell division
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MEWQNEAEQV ESAQSQNWLN VKVMTDDQME LLRKQISIYA TICEQLIEMR KAISVHHDFP 60 GIRVGNPYCY QLVGSGGHKI STRQRWNPTS MQLQILESIY EQGNGTPSKQ KIKEITNQLA 120 QHGQISEANV YNWFQNRRAR SKRKQQFQNN IIQSQSPQLL DSPHPTDKKT RSADIIHSYE 180 NLFYQTPDLG IEHLLGKMEA PPSLTSYCLV EPYDTVGSSS PKAFM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	144	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_26.173

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021902690.1	1e-170	WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	2e-63	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	V7ART8	5e-72	V7ART8_PHAVU; Uncharacterized protein
STRING	evm.model.supercontig_26.173	1e-169	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17223	6	11
Representative plant	OGRP1873	16	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	4e-56	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_26.173

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]