PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_264.16

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

GeBP

Protein Properties

Length: 456aa MW: 49905.4 Da PI: 4.525

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_264.16	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	115.1	4.1e-36	146	244	2	97
DUF573 2 lfqrlwseeDeivlLqGlidf.kaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkeps 79 lfqrlw++eDei lLqG+ ++ ++++g s + d+ fy+++k++++++++k+qlveK+rrLKkK+++ ++k++sgk++s evm.model.supercontig_264.16 146 LFQRLWTDEDEIELLQGFFEYtTSHRGIgsSHHPDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMSKISSGKDFS 226 79*****************5567787745566******************************************* PP DUF573 80 fskehdqkifelskkiWg 97 f+++hdq +fe+s+kiW evm.model.supercontig_264.16 227 FKSPHDQATFEISRKIWS 244 ***************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	3.6E-34	147	244	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence Send to blast
MASEQDDTVY LDESHELDED EEESESDEDL EENDDVLVPE DDDDPEEEEE LNSASTSSPP 60 AVSVANVVTT TTSTVTPVTS TICAVTVAVP AALPLTTIPN GTDKPVMSSI DDPLRDSKRH 120 RMADLSIIVQ EDKQRPVPQL DESRRLFQRL WTDEDEIELL QGFFEYTTSH RGIGSSHHPD 180 TALFYDQIKS KLQLDFNKNQ LVEKLRRLKK KYRNVMSKIS SGKDFSFKSP HDQATFEISR 240 KIWSNTGKIL GFEDNVLDYE ETNNNVSNNH NNISHHPNFE VKIEDGVERK GASRSRKRSR 300 SKSIGKIEEK RIPGDGFVLN SENFGSAGVG AGAGTGATAT AAGGGGGIGN VGVGAIEETL 360 RSCLSPVFKE MLNGAMMMMM GGMPCGGRGI GAWNPLMPIN FGGMVGFGGG SGSDVVDERW 420 RKQQILELEV YSRRLELVQD QIKASLQELR SMGGG*

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence Send to blast

MASEQDDTVY LDESHELDED EEESESDEDL EENDDVLVPE DDDDPEEEEE LNSASTSSPP  60
AVSVANVVTT TTSTVTPVTS TICAVTVAVP AALPLTTIPN GTDKPVMSSI DDPLRDSKRH  120
RMADLSIIVQ EDKQRPVPQL DESRRLFQRL WTDEDEIELL QGFFEYTTSH RGIGSSHHPD  180
TALFYDQIKS KLQLDFNKNQ LVEKLRRLKK KYRNVMSKIS SGKDFSFKSP HDQATFEISR  240
KIWSNTGKIL GFEDNVLDYE ETNNNVSNNH NNISHHPNFE VKIEDGVERK GASRSRKRSR  300
SKSIGKIEEK RIPGDGFVLN SENFGSAGVG AGAGTGATAT AAGGGGGIGN VGVGAIEETL  360
RSCLSPVFKE MLNGAMMMMM GGMPCGGRGI GAWNPLMPIN FGGMVGFGGG SGSDVVDERW  420
RKQQILELEV YSRRLELVQD QIKASLQELR SMGGG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_264.16

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021912484.1	0.0	probable transcription factor At3g04930
Swissprot	F4K5T4	1e-119	STKLU_ARATH; Probable transcription factor At5g28040
TrEMBL	D7L304	1e-120	D7L304_ARALL; Transcription regulator
STRING	evm.model.supercontig_264.16	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3098	27	64
Representative plant	OGRP3184	10	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	1e-81	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_264.16

Publications ? help Back to Top
García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes. Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586 [PMID:29264953]