PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_265.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 245aa    MW: 28250.7 Da    PI: 9.9898
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_265.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.95.6e-181150342
                                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                                 i n+s r+ tf kR++g++KK +ELS+LCd++++ ii+s+
  evm.model.supercontig_265.1 11 ITNNSARKATFKKRKKGLMKKVSELSTLCDVKACTIIYSP 50
                                 89*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.731149IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-24160IPR002100Transcription factor, MADS-box
CDDcd002661.58E-21285No hitNo description
SuperFamilySSF554554.32E-24295IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-10323IPR002100Transcription factor, MADS-box
PfamPF003198.1E-191151IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MTRKKVKLAY ITNNSARKAT FKKRKKGLMK KVSELSTLCD VKACTIIYSP YDSQPDVWPS  60
PLGAQHVLAD FKRMPEIEQS KKMVNKESFL RQRITKAIDQ LKKRRNNNRE KEIMDIMFQS  120
LTGKSLHQLN LIDLNDLGWL IEQHLKEIQK SMETLSKSPL PQEVTDKGVM KGPGETFTQI  180
KEDSMVQTLQ QPQMQFVDGM NPQAQQQHYV GLNEEQETIK ANIEGLVKIE EDTRQFFGYF  240
KTLL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAYITNNSARKATFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_265.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021912474.11e-159agamous-like MADS-box protein AGL80
SwissprotQ9FJK35e-57AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A2H5NT825e-81A0A2H5NT82_CITUN; Uncharacterized protein
TrEMBLV4SWL05e-81V4SWL0_9ROSI; Uncharacterized protein
STRINGevm.model.supercontig_265.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-59AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]