PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_265.5
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 270aa    MW: 30748.8 Da    PI: 10.0102
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_265.5genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.32.7e-151150342
                                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                                 i n+s r+ tf k ++g++KK +ELS+LCd +++ ii+s+
  evm.model.supercontig_265.5 11 ITNNSARKATFKKMKKGLMKKVSELSTLCDFKACTIIYSP 50
                                 89*************************************8 PP
2SRF-TF351.8e-111882251450
                                  HHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEEEE CS
                       SRF-TF  14 skRrngilKKAeELSvLCdaevaviifss.tgklyeys 50 
                                   k ++ ++KK +ELS+LCd++++ ii+s+ + kl  ++
  evm.model.supercontig_265.5 188 KKKKKELMKKVSELSTLCDVNACAIIYSPyDSKLEVWP 225
                                  689999**********************8456777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.09E-21183IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.343149IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-20160IPR002100Transcription factor, MADS-box
CDDcd002666.54E-19283No hitNo description
PRINTSPR004048.0E-9323IPR002100Transcription factor, MADS-box
PfamPF003197.1E-161151IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-93859IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.545168215IPR002100Transcription factor, MADS-box
SMARTSM004326.2E-9168226IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-16171261IPR002100Transcription factor, MADS-box
CDDcd002664.36E-16171251No hitNo description
PfamPF003191.7E-10179220IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MTRKKVKLAY ITNNSARKAT FKKMKKGLMK KVSELSTLCD FKACTIIYSP YDSQPDVWPS  60
PLGAHHVLAD FKRMPEMEQS KNMGWLIEQH LKEIQKSMET LSKSPLPQEV TDKGVMKGPG  120
ETFTQIKEDS MVQTLQQPQM QFVDGMNPQA QQQHYVGLNE EQTRQNTMIG NKVELAYITN  180
DSIRKAIKKK KKELMKKVSE LSTLCDVNAC AIIYSPYDSK LEVWPSPLGA QHVLADSKRM  240
PKIEQSKKMV NQECVLHQRI TKATDQLKK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAYITNNSARKATFKKMK
2187196KKKKKELMKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_265.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021912474.13e-88agamous-like MADS-box protein AGL80
SwissprotQ9FJK34e-27AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A2G2VZC32e-67A0A2G2VZC3_CAPBA; Agamous-like MADS-box protein AGL80
STRINGevm.model.supercontig_265.50.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-29AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]