PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_27.135
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 357aa    MW: 40556.7 Da    PI: 4.9392
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_27.135genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.51.6e-181461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT+eEd++l+d++ ++G g+W+t ++  g+ R++k+c++rw +yl
  evm.model.supercontig_27.135 14 KGPWTPEEDQKLLDYISKHGYGNWRTLPQNAGLQRCGKSCRLRWTNYL 61
                                  79********************************************97 PP
2Myb_DNA-binding56.28.1e-1867111147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rg+++ eE+e +++++k lG++ W++Ia++++ gRt++++k++w+++
  evm.model.supercontig_27.135  67 RGKFSLEEEEAIIQLHKILGNK-WSAIAARLP-GRTDNEIKNYWNTH 111
                                   89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.1E-26564IPR009057Homeodomain-like
PROSITE profilePS5129418.918961IPR017930Myb domain
SuperFamilySSF466893.67E-3211108IPR009057Homeodomain-like
SMARTSM007172.7E-131363IPR001005SANT/Myb domain
PfamPF002491.5E-161461IPR001005SANT/Myb domain
CDDcd001673.87E-121661No hitNo description
PROSITE profilePS5129427.16162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.3E-2765116IPR009057Homeodomain-like
SMARTSM007174.3E-1766114IPR001005SANT/Myb domain
PfamPF002493.6E-1667111IPR001005SANT/Myb domain
CDDcd001675.02E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MGRSPCCDKN GLKKGPWTPE EDQKLLDYIS KHGYGNWRTL PQNAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLEEEEAIIQ LHKILGNKWS AIAARLPGRT DNEIKNYWNT HIRKKLLRMG  120
IDPVTHSPRL DLLDLSSFLS SCLYNSSSSN YSRLLDLQQS MVNPEFLTLS TSLYPENGDQ  180
TENNNNQTAS SFLLQNSQQT QLSNSHFPLD TQYQTLGQQI PCSTPLVFCN EEQVMSNAGQ  240
LGNFNSELSC RQWQTDQNLG LSSDLGKSEE SYVPLPASYD DHNNYYNYEM MDPSFSNSNN  300
QNFNFGSSSP TPLNSNSTYN NINSSSTITD QDERDSYCSN FINFEIPETL NVNEFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_27.135
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021902232.10.0transcription factor MYB102-like
SwissprotQ9LDR81e-114MY102_ARATH; Transcription factor MYB102
TrEMBLM5WTM31e-132M5WTM3_PRUPE; Uncharacterized protein
STRINGevm.model.supercontig_27.1350.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.15e-91MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]