PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_27.156
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 231aa    MW: 26971.6 Da    PI: 6.3043
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_27.156genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.25.7e-161966148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+W++eEde+lv +++++G  +W++ ++  g+ R++k+c++rw +yl
  evm.model.supercontig_27.156 19 KGAWSPEEDEKLVAYIRRYGIWNWSKMPKPAGLSRSGKSCRLRWMNYL 66
                                  79******************99************************97 PP
2Myb_DNA-binding60.63.4e-1972117148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg++++eE+e ++ ++++lG++ W+tIa +++ gRt++++k++w+++l
  evm.model.supercontig_27.156  72 RGKFSKEEEETIIALHNKLGNR-WSTIATKLP-GRTDNDIKNYWHTHL 117
                                   89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.0411466IPR017930Myb domain
SuperFamilySSF466896.83E-3016113IPR009057Homeodomain-like
SMARTSM007177.8E-121868IPR001005SANT/Myb domain
PfamPF002499.5E-141966IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-232073IPR009057Homeodomain-like
CDDcd001672.30E-82166No hitNo description
PROSITE profilePS5129427.75367121IPR017930Myb domain
SMARTSM007171.1E-1771119IPR001005SANT/Myb domain
PfamPF002496.7E-1772117IPR001005SANT/Myb domain
CDDcd001673.28E-1174117No hitNo description
Gene3DG3DSA:1.10.10.607.9E-2774120IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MEGGGESSSK LRRCISLNKG AWSPEEDEKL VAYIRRYGIW NWSKMPKPAG LSRSGKSCRL  60
RWMNYLRPNI KRGKFSKEEE ETIIALHNKL GNRWSTIATK LPGRTDNDIK NYWHTHLKKR  120
RKNDINKKPS QEVLIFTKTK ENSTETQELI ISPEPSNSES STVIQMSPCQ PISDLVEERK  180
LTMLEEEIIL YDEEYWATYV DYSLCVLNSD FYNDEVENDV WISLFMDEIY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-261712025127MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117121KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_27.156
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021902283.11e-170transcription factor MYB13-like
TrEMBLA0A315B5H17e-62A0A315B5H1_PRUYE; Myb-related protein Myb4
STRINGevm.model.supercontig_27.1561e-169(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.16e-51myb domain protein 15