PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_27.2
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family HB-other
Protein Properties Length: 222aa    MW: 23877.7 Da    PI: 5.4522
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_27.2genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.91.1e-203994257
                                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                    Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                                 kR+  t++qle+Le++++ + yps+++r+eL++klgL++rq ++WF+ rR k+kk
  evm.model.supercontig_27.2 39 PKRQMKTPYQLETLEKVYAVETYPSEATRAELSEKLGLSDRQLQMWFCHRRLKDKK 94
                                69****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-201595IPR009057Homeodomain-like
SuperFamilySSF466894.6E-182594IPR009057Homeodomain-like
PROSITE profilePS5007116.523595IPR001356Homeobox domain
SMARTSM003894.7E-193799IPR001356Homeobox domain
PfamPF000462.3E-183994IPR001356Homeobox domain
CDDcd000862.89E-184095No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MEAGSDGETP VRNNSSNNNN NNGSNNKSLG NSSEGLAKPK RQMKTPYQLE TLEKVYAVET  60
YPSEATRAEL SEKLGLSDRQ LQMWFCHRRL KDKKEVPAKK PRKGIALPPP GSPEDELRVG  120
HEPDYGSGSG SGSGSSPFME SRKLGPGSSN SRGAMVDEGP IGRRYYESPQ TIMELRAIAC  180
VEAQLGEPLR EDGPILGMEF DPLPPGAFGA PIEVSCPVFI G*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18794RRLKDKKE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_27.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021902107.11e-144homeobox-DDT domain protein RLT1
SwissprotF4HY564e-64RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBLA0A0B0MXB45e-82A0A0B0MXB4_GOSAR; Homeobox ceh-5
TrEMBLA0A1R3I1C21e-80A0A1R3I1C2_COCAP; Uncharacterized protein
STRINGevm.model.supercontig_27.21e-160(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2568133
Representative plantOGRP15771634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.13e-60homeobox-1